### ### Fri Jan 23 13:20:28 EST 2004: ### bmake bulk-package for hmmer-2.3.1 ### Current pkg count: 3 installed packages: digest-20021220 patch-2.5.4nb2 xpkgwedge-1.9 ### BULK> Full rebuild in progress... BULK> Cleaning package and its depends ===> Cleaning for hmmer-2.3.1 ===> Cleaning for patch-2.5.4nb2 BULK> Removing installed packages which are not needed to build hmmer-2.3.1 BULK> Keeping BULK_PREREQ: xpkgwedge-1.9 (pkgtools/xpkgwedge) BULK> hmmer-2.3.1 requires installed package digest-20021220 (pkgtools/digest pkgtools/rdigest) to build. BULK> hmmer-2.3.1 requires installed package patch-2.5.4nb2 (devel/patch) to build. BULK> Installing packages which are required to build hmmer-2.3.1. BULK> Required package patch-2.5.4nb2 (devel/patch) is already installed BULK> Required package xpkgwedge-1.9 (pkgtools/xpkgwedge) is already installed BULK> Required package digest-20021220 (pkgtools/digest) is already installed bmake package (hmmer-2.3.1) ===> Checking for vulnerabilities in hmmer-2.3.1 => hmmer-2.3.1.tar.gz doesn't seem to exist on this system. => Attempting to fetch hmmer-2.3.1.tar.gz from ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.1/. => [1023122 bytes] => Checksum OK for hmmer-2.3.1.tar.gz. work.sol9 -> /work/pkgbuild/biology/hmmer/work.sol9 ===> Extracting for hmmer-2.3.1 ===> Patching for hmmer-2.3.1 ===> Applying pkgsrc patches for hmmer-2.3.1 ===> Overriding tools for hmmer-2.3.1 ===> Buildlinking for hmmer-2.3.1 ===> Configuring for hmmer-2.3.1 configure: WARNING: If you wanted to set the --build type, don't use --host. If a cross compiler is detected then cross compile mode will be used. configure: configuring HMMER for your system. ./configure: !: not found configure: This is a precompiled binary distribution - using abbreviated config configure: creating ./config.status config.status: creating Makefile ===> Building for hmmer-2.3.1 bmake: no target to make. bmake: stopped in /work/pkgbuild/biology/hmmer/work.sol9/hmmer-2.3.1/squid *** Error code 2 Stop. bmake: stopped in /work/pkgbuild/biology/hmmer/work.sol9/hmmer-2.3.1 *** Error code 1 Stop. bmake: stopped in /usr/pkgsrc/biology/hmmer *** Error code 1 Stop. bmake: stopped in /usr/pkgsrc/biology/hmmer BULK> hmmer-2.3.1 was marked as broken: -rw-r--r-- 1 root other 2271 Jan 23 13:21 .broken.html bmake deinstall ===> Deinstalling for hmmer BULK> Marking all packages which depend upon hmmer-2.3.1 as broken: BULK> Build for hmmer-2.3.1 was not successful, aborting.